SNPMaP: SNP Microarrays and Pooling

The SNPMaP package for provides a framework for the analysis of SNPMaP (SNP microarrays and pooling) genome-wide association data using the tools available in the increasingly popular Open Source statistical computing environment.

If you find this package useful, please cite:

Davis, O.S.P., Plomin, R., & Schalkwyk, L.C. (2009). The SNPMaP package for R: A framework for genome-wide association using DNA pooling on microarrays. Bioinformatics, 25, 281-283. doi:10.1093/bioinformatics/btn587

News

SNPMaP 1.0.2 Released

SNPMaP is now available on CRAN (the Comprehensive R Archive Network repository). This first public release includes support for recent Affymetrix arrays and provides the option of memory-mapped objects, allowing the analysis to be carried out comfortably on a desktop computer with 2GB of memory. Read more...

SNPMaP requires the affxparser package from Bioconductor to read CEL files, so to install try

source("http://bioconductor.org/biocLite.R")

biocLite("affxparser")

install.packages("SNPMaP", dependencies="Depends")

Or see the download page.